Review




Structured Review

Human Protein Atlas wdr77 expression
Wdr77 Expression, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/wdr77 expression/product/Human Protein Atlas
Average 90 stars, based on 1 article reviews
wdr77 expression - by Bioz Stars, 2026-02
90/100 stars

Images



Similar Products

90
Human Protein Atlas wdr77 expression
Wdr77 Expression, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/wdr77 expression/product/Human Protein Atlas
Average 90 stars, based on 1 article reviews
wdr77 expression - by Bioz Stars, 2026-02
90/100 stars
  Buy from Supplier

90
Human Protein Atlas wdr77 expression in gbm cell line u251
Expression analysis of <t>WDR77</t> in glioma datasets and tissue Samples. ( A ) The expression of WDR77 in different glioma datasets. ( B ) Expression detection of WDR77 in glioma samples. ( C ) Grayscale statistical results of WDR77 expression in different grades of glioma tissue relative to GAPDH. ( D ) WDR77 expression in GBM cell lines U251 by IHC. p < 0.01 is considered statistically significant.
Wdr77 Expression In Gbm Cell Line U251, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/wdr77 expression in gbm cell line u251/product/Human Protein Atlas
Average 90 stars, based on 1 article reviews
wdr77 expression in gbm cell line u251 - by Bioz Stars, 2026-02
90/100 stars
  Buy from Supplier

90
OriGene expression plasmids for mep50/wdr77
(A) Schematic representation of PRMT5 splicing variants (based on NCBI human genome sequence of PRMT5 from www.ncbi.nlm.nih.gov ), their expression profile in HepG2_hNTCP cells and positions of PRMT5-specific siRNAs used in this work. N, number of clones corresponding to PRMT5 splice variants. (B) and (C) HepG2_hNTCP cells were transfected with expression plasmids for PRMT1, <t>PRMT3,</t> PRMT5v1, PRMT5v2 and MEP50/WDR77 tagged with Flag, or an empty vector, pcDNA. Forty-eight hours after transfection, cells were infected with HBV (1000 VGE/cell). Four days post-infection, cells were harvested for DNA and RNA isolation. The quantification of total HBV DNA (B) and cccDNA (C) were analyzed by qPCR and the levels were normalized to albumin. (D) HBV RNA (pgRNA+preC RNA) transcription was analyzed by RT-qPCR. The RNA transcript levels were normalized to cccDNA. Asterisks indicate statistically significant differences between the control (pcDNA) and PRMTs groups determined by ANOVA (* P<0.05; ** P<0.01; *** P<0.001). Error bars represent standard deviations (SD) of three independent experiments. (E) The expression levels of transfected PRMT1, 3, 5 and MEP50 were estimated by Western blotting using anti-Flag antibodies.
Expression Plasmids For Mep50/Wdr77, supplied by OriGene, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/expression plasmids for mep50/wdr77/product/OriGene
Average 90 stars, based on 1 article reviews
expression plasmids for mep50/wdr77 - by Bioz Stars, 2026-02
90/100 stars
  Buy from Supplier

Image Search Results


Expression analysis of WDR77 in glioma datasets and tissue Samples. ( A ) The expression of WDR77 in different glioma datasets. ( B ) Expression detection of WDR77 in glioma samples. ( C ) Grayscale statistical results of WDR77 expression in different grades of glioma tissue relative to GAPDH. ( D ) WDR77 expression in GBM cell lines U251 by IHC. p < 0.01 is considered statistically significant.

Journal: Scientific Reports

Article Title: Deciphering the prognostic significance of WDR77 in gliomas: a comprehensive analysis

doi: 10.1038/s41598-024-82867-w

Figure Lengend Snippet: Expression analysis of WDR77 in glioma datasets and tissue Samples. ( A ) The expression of WDR77 in different glioma datasets. ( B ) Expression detection of WDR77 in glioma samples. ( C ) Grayscale statistical results of WDR77 expression in different grades of glioma tissue relative to GAPDH. ( D ) WDR77 expression in GBM cell lines U251 by IHC. p < 0.01 is considered statistically significant.

Article Snippet: Furthermore, we queried the Human Protein Atlas (HPA) database ( https://www.proteinatlas.org/ ) for WDR77 expression in the GBM cell line U251.

Techniques: Expressing, Paraffin-embedded Immunohistochemistry

Correlation between WDR77 expression and glioma molecular subtypes. ( A – D ) WDR77 was significantly enriched in the 1p19q non-codel subtype from the TCGA and CGGA cohorts. ( B – E ) WDR77 was significantly enriched in the IDH wild type subtype from the TCGA and CGGA cohorts . ( C – F ) The expression of WDR77 was not statistically different between male and female glioma patients. ( G ) Among the oligoderdroglioma, oligoastrocytoma and GBM subtypes, WDR77 is the most expressed in GBM. (H–I) ROC curve analysis showing the predictive value of WDR77 in the TCGA and CGGA cohorts. *p < 0.05, **p < 0.01, ***p < 0.001.

Journal: Scientific Reports

Article Title: Deciphering the prognostic significance of WDR77 in gliomas: a comprehensive analysis

doi: 10.1038/s41598-024-82867-w

Figure Lengend Snippet: Correlation between WDR77 expression and glioma molecular subtypes. ( A – D ) WDR77 was significantly enriched in the 1p19q non-codel subtype from the TCGA and CGGA cohorts. ( B – E ) WDR77 was significantly enriched in the IDH wild type subtype from the TCGA and CGGA cohorts . ( C – F ) The expression of WDR77 was not statistically different between male and female glioma patients. ( G ) Among the oligoderdroglioma, oligoastrocytoma and GBM subtypes, WDR77 is the most expressed in GBM. (H–I) ROC curve analysis showing the predictive value of WDR77 in the TCGA and CGGA cohorts. *p < 0.05, **p < 0.01, ***p < 0.001.

Article Snippet: Furthermore, we queried the Human Protein Atlas (HPA) database ( https://www.proteinatlas.org/ ) for WDR77 expression in the GBM cell line U251.

Techniques: Expressing

Survival curve of WDR77 in different databases. ( A ) Survival curve of WDR77 in Rembrandt database. ( B ) Survival curve of WDR77 in Gravendeel databset. ( C ) Survival curve of WDR77 in the TCGA database. ( D ) Survival curve of WDR77 in CGGA database. ( E ) Univariate Cox analyses evaluating the independent prognostic value of WDR77 in glioma patients from the CGGA database. ( F ) Multivariate Cox analyses evaluating the independent prognostic value of WDR77 in glioma patients from the CGGA database.

Journal: Scientific Reports

Article Title: Deciphering the prognostic significance of WDR77 in gliomas: a comprehensive analysis

doi: 10.1038/s41598-024-82867-w

Figure Lengend Snippet: Survival curve of WDR77 in different databases. ( A ) Survival curve of WDR77 in Rembrandt database. ( B ) Survival curve of WDR77 in Gravendeel databset. ( C ) Survival curve of WDR77 in the TCGA database. ( D ) Survival curve of WDR77 in CGGA database. ( E ) Univariate Cox analyses evaluating the independent prognostic value of WDR77 in glioma patients from the CGGA database. ( F ) Multivariate Cox analyses evaluating the independent prognostic value of WDR77 in glioma patients from the CGGA database.

Article Snippet: Furthermore, we queried the Human Protein Atlas (HPA) database ( https://www.proteinatlas.org/ ) for WDR77 expression in the GBM cell line U251.

Techniques:

Effect of WDR77 knockdown in glioma cells. ( A ) The relationship between WDR77 and cell cycle function-related genes in TCGA glioma samples. ( B ) Flow cytometry analysis of cell cycle distribution in U87-MG and U251 glioma cells. Cells were treated with different concentrations (5 µmol, 10 µmol, 15 µmol) of siRNA targeting WDR77 . WT represents wild-type, untreated cells. The x-axis shows the DNA content, and the y-axis shows the cell count. The peaks correspond to the G1, S, and G2 phases of the cell cycle. ( C ) Bar graphs showing the percentage distribution of cells in the G1, S, and G2 phases for U87-MG and U251 cells treated with different concentrations of siRNA-WDR77 (5 µmol, 10 µmol, 20 µmol).

Journal: Scientific Reports

Article Title: Deciphering the prognostic significance of WDR77 in gliomas: a comprehensive analysis

doi: 10.1038/s41598-024-82867-w

Figure Lengend Snippet: Effect of WDR77 knockdown in glioma cells. ( A ) The relationship between WDR77 and cell cycle function-related genes in TCGA glioma samples. ( B ) Flow cytometry analysis of cell cycle distribution in U87-MG and U251 glioma cells. Cells were treated with different concentrations (5 µmol, 10 µmol, 15 µmol) of siRNA targeting WDR77 . WT represents wild-type, untreated cells. The x-axis shows the DNA content, and the y-axis shows the cell count. The peaks correspond to the G1, S, and G2 phases of the cell cycle. ( C ) Bar graphs showing the percentage distribution of cells in the G1, S, and G2 phases for U87-MG and U251 cells treated with different concentrations of siRNA-WDR77 (5 µmol, 10 µmol, 20 µmol).

Article Snippet: Furthermore, we queried the Human Protein Atlas (HPA) database ( https://www.proteinatlas.org/ ) for WDR77 expression in the GBM cell line U251.

Techniques: Knockdown, Flow Cytometry, Cell Counting

Correlation between WDR77 Levels and Immune Cell Infiltration in Glioma. ( A ) The correlation between WDR77 levels and immune cell-specific marker genes using the online analysis tool TIMER 2.0. ( B , C ) We evaluated the association between the expression of common immune infiltrating cell-specific markers (Treg cells, Macrophage cells, Dendritic cells, and B cells) and the WDR77 gene. Our analysis established that WDR77 levels were positively correlated with B cells (GBM: R = 0.409, p < 0.01; LGG: R = − 0.193, p < 0.01), Treg cells (GBM: R = 0.409, p < 0.01; LGG: R = − 0.193, p < 0.01), Macrophage cells (GBM: R = 0.409, p < 0.01; LGG: R = 0.409, p < 0.01), Dendritic cells (GBM: R = 0.409, p < 0.01; LGG: R = − 0.193, p < 0.01). These results suggest that glioma tissues with elevated WDR77 levels are highly infiltrated with invasive immune cells, especially those with immunosuppressive characteristics.

Journal: Scientific Reports

Article Title: Deciphering the prognostic significance of WDR77 in gliomas: a comprehensive analysis

doi: 10.1038/s41598-024-82867-w

Figure Lengend Snippet: Correlation between WDR77 Levels and Immune Cell Infiltration in Glioma. ( A ) The correlation between WDR77 levels and immune cell-specific marker genes using the online analysis tool TIMER 2.0. ( B , C ) We evaluated the association between the expression of common immune infiltrating cell-specific markers (Treg cells, Macrophage cells, Dendritic cells, and B cells) and the WDR77 gene. Our analysis established that WDR77 levels were positively correlated with B cells (GBM: R = 0.409, p < 0.01; LGG: R = − 0.193, p < 0.01), Treg cells (GBM: R = 0.409, p < 0.01; LGG: R = − 0.193, p < 0.01), Macrophage cells (GBM: R = 0.409, p < 0.01; LGG: R = 0.409, p < 0.01), Dendritic cells (GBM: R = 0.409, p < 0.01; LGG: R = − 0.193, p < 0.01). These results suggest that glioma tissues with elevated WDR77 levels are highly infiltrated with invasive immune cells, especially those with immunosuppressive characteristics.

Article Snippet: Furthermore, we queried the Human Protein Atlas (HPA) database ( https://www.proteinatlas.org/ ) for WDR77 expression in the GBM cell line U251.

Techniques: Marker, Expressing

( A – V ) The WDR77 interaction network of co-expressed genes in different tumours. The coexpression network was drawn using R package, Only the top 20 genes with the highest correlations are shown. Red circle shows input gene, orange circle represents cell metabolism gene, and the sky circle represents other genes.

Journal: Scientific Reports

Article Title: Deciphering the prognostic significance of WDR77 in gliomas: a comprehensive analysis

doi: 10.1038/s41598-024-82867-w

Figure Lengend Snippet: ( A – V ) The WDR77 interaction network of co-expressed genes in different tumours. The coexpression network was drawn using R package, Only the top 20 genes with the highest correlations are shown. Red circle shows input gene, orange circle represents cell metabolism gene, and the sky circle represents other genes.

Article Snippet: Furthermore, we queried the Human Protein Atlas (HPA) database ( https://www.proteinatlas.org/ ) for WDR77 expression in the GBM cell line U251.

Techniques:

(A) Schematic representation of PRMT5 splicing variants (based on NCBI human genome sequence of PRMT5 from www.ncbi.nlm.nih.gov ), their expression profile in HepG2_hNTCP cells and positions of PRMT5-specific siRNAs used in this work. N, number of clones corresponding to PRMT5 splice variants. (B) and (C) HepG2_hNTCP cells were transfected with expression plasmids for PRMT1, PRMT3, PRMT5v1, PRMT5v2 and MEP50/WDR77 tagged with Flag, or an empty vector, pcDNA. Forty-eight hours after transfection, cells were infected with HBV (1000 VGE/cell). Four days post-infection, cells were harvested for DNA and RNA isolation. The quantification of total HBV DNA (B) and cccDNA (C) were analyzed by qPCR and the levels were normalized to albumin. (D) HBV RNA (pgRNA+preC RNA) transcription was analyzed by RT-qPCR. The RNA transcript levels were normalized to cccDNA. Asterisks indicate statistically significant differences between the control (pcDNA) and PRMTs groups determined by ANOVA (* P<0.05; ** P<0.01; *** P<0.001). Error bars represent standard deviations (SD) of three independent experiments. (E) The expression levels of transfected PRMT1, 3, 5 and MEP50 were estimated by Western blotting using anti-Flag antibodies.

Journal: PLoS ONE

Article Title: PRMT5: A novel regulator of Hepatitis B virus replication and an arginine methylase of HBV core

doi: 10.1371/journal.pone.0186982

Figure Lengend Snippet: (A) Schematic representation of PRMT5 splicing variants (based on NCBI human genome sequence of PRMT5 from www.ncbi.nlm.nih.gov ), their expression profile in HepG2_hNTCP cells and positions of PRMT5-specific siRNAs used in this work. N, number of clones corresponding to PRMT5 splice variants. (B) and (C) HepG2_hNTCP cells were transfected with expression plasmids for PRMT1, PRMT3, PRMT5v1, PRMT5v2 and MEP50/WDR77 tagged with Flag, or an empty vector, pcDNA. Forty-eight hours after transfection, cells were infected with HBV (1000 VGE/cell). Four days post-infection, cells were harvested for DNA and RNA isolation. The quantification of total HBV DNA (B) and cccDNA (C) were analyzed by qPCR and the levels were normalized to albumin. (D) HBV RNA (pgRNA+preC RNA) transcription was analyzed by RT-qPCR. The RNA transcript levels were normalized to cccDNA. Asterisks indicate statistically significant differences between the control (pcDNA) and PRMTs groups determined by ANOVA (* P<0.05; ** P<0.01; *** P<0.001). Error bars represent standard deviations (SD) of three independent experiments. (E) The expression levels of transfected PRMT1, 3, 5 and MEP50 were estimated by Western blotting using anti-Flag antibodies.

Article Snippet: Expression plasmids for PRMT1, PRMT3, PRMT5v1 (splice variant 1), PRMT5v2 (splice variant 2), PRMT7, PRMT9 (Q6P2P2 in the UniProt Database, previously also referred to as PRMT10) and MEP50/WDR77 tagged with myc and Flag were purchased from OriGene Technologies.

Techniques: Sequencing, Expressing, Clone Assay, Transfection, Plasmid Preparation, Infection, Isolation, Quantitative RT-PCR, Control, Western Blot

(A) Down-regulation of endogenous PRMT1, 3, 5, and MEP50 mRNA expression in siRNA-transfected HepG2_hNTCP cells was estimated three days post-infection by RT-qPCR using primers specific for PRMT1, 3, 5, and MEP50 cDNAs and subsequently normalized to the expression of β-actin. Error bars represent SD of four independent experiments. (B) and (C) HepG2_hNTCP cells were transfected with specific siRNAs targeting PRMT1, PRMT3, PRMT5, MEP50, or non-targeting-ctrlsiRNA. Forty-eight hours after transfection, cells were infected with HBV (1000 VGE/cell). Four days post-infection, cells were harvested for DNA and RNA isolation. The levels of total HBV DNA (B) and cccDNA (C) were determined by qPCR and normalized to albumin. (D) HBV RNA (pgRNA+preC RNA) transcription was analyzed by RT-qPCR and normalized to cccDNA. HBeAg (E) and HBsAg (F) in the culture supernatants were analyzed by enzyme-linked immunosorbent assay (ELISA) four days post-infection. Asterisks indicate statistically significant differences between the control (ctrlsiRNA) and PRMTsiRNA groups determined by ANOVA (* P<0.05; ** P<0.01; *** P<0.001). Error bars represent SD of three independent experiments.

Journal: PLoS ONE

Article Title: PRMT5: A novel regulator of Hepatitis B virus replication and an arginine methylase of HBV core

doi: 10.1371/journal.pone.0186982

Figure Lengend Snippet: (A) Down-regulation of endogenous PRMT1, 3, 5, and MEP50 mRNA expression in siRNA-transfected HepG2_hNTCP cells was estimated three days post-infection by RT-qPCR using primers specific for PRMT1, 3, 5, and MEP50 cDNAs and subsequently normalized to the expression of β-actin. Error bars represent SD of four independent experiments. (B) and (C) HepG2_hNTCP cells were transfected with specific siRNAs targeting PRMT1, PRMT3, PRMT5, MEP50, or non-targeting-ctrlsiRNA. Forty-eight hours after transfection, cells were infected with HBV (1000 VGE/cell). Four days post-infection, cells were harvested for DNA and RNA isolation. The levels of total HBV DNA (B) and cccDNA (C) were determined by qPCR and normalized to albumin. (D) HBV RNA (pgRNA+preC RNA) transcription was analyzed by RT-qPCR and normalized to cccDNA. HBeAg (E) and HBsAg (F) in the culture supernatants were analyzed by enzyme-linked immunosorbent assay (ELISA) four days post-infection. Asterisks indicate statistically significant differences between the control (ctrlsiRNA) and PRMTsiRNA groups determined by ANOVA (* P<0.05; ** P<0.01; *** P<0.001). Error bars represent SD of three independent experiments.

Article Snippet: Expression plasmids for PRMT1, PRMT3, PRMT5v1 (splice variant 1), PRMT5v2 (splice variant 2), PRMT7, PRMT9 (Q6P2P2 in the UniProt Database, previously also referred to as PRMT10) and MEP50/WDR77 tagged with myc and Flag were purchased from OriGene Technologies.

Techniques: Expressing, Transfection, Infection, Quantitative RT-PCR, Isolation, Enzyme-linked Immunosorbent Assay, Control

(A) Schematic representation of HBc (Genotype A, subtype adw2) and its C-terminal deletion mutant (HBc-ΔC). ARD, Arginine-rich domain; S, serine residues modified by phosphorylation. (B) Flag-tagged PRMT1, PRMT3, PRMT5v1 and MEP50 were in vitro translated using TNT T7 quick coupled transcription/translation system and incubated with HBc fused to GST or GST alone immobilized on glutathione-Sepharose beads. The bound proteins were eluted and resolved on 10% SDS-PAGE followed by Western blot with anti-Flag antibodies. Five % of PRMTs´ protein input is shown below (5% input). (C) HBc protein interacts with PRMT3, PRMT5 and MEP50 via its C-terminal domain. HEK293T cells were transfected with equal amounts of Flag-tagged PRMT1, PRMT3, PRMT5 (v1, v2) and MEP50 expression constructs. Forty-eight hours after transfection, the cell lysates were incubated with HBc (aa 1–185), HBc-ΔC (aa 1–149) fused to GST or GST alone immobilized on glutathione-Sepharose beads. The bound proteins were eluted and resolved on 10% SDS-PAGE followed by Western blot with anti-Flag antibodies. Five % of PRMTs´ protein input is shown below (5% input). (D) Coomassie blue staining of purified GST, GST-HBc, and GST-HBc-ΔC used in GST pull-down experiments. (E) Co-immunoprecipitation of HBc and PRMTs in transfected HEK293T cells. HEK293T cells were transfected with Flag-tagged PRMTs’ expression plasmids and HBc-V5/AP expression plasmid, as indicated. Forty-eight hours after transfection, the cells were harvested and protein lysates were prepared. Protein lysates (400 μg) were immunoprecipitated (IP) with anti-Flag antibodies, and the immunoprecipitated complexes were analyzed by Western blot (WB) with NeutrAvidin conjugated to HRP. The relative levels of PRMTs and HBc in 40 μg of protein lysates are shown for comparison (10% input). (F) Co-immunoprecipitation of HBc and endogenous PRMT5 in HepG2.2.15 cells. Protein lysates (400 μg) isolated from HepG2.2.15 cells were immunoprecipitated (IP) with anti-HBc or control (IgG) antibodies. The immunoprecipitated complexes were analyzed by Western blot (WB) with anti-PRMT5 and anti-HBc antibodies. The relative levels of PRMT5 and HBc in 40 μg of protein lysates are shown in bottom panels (10% input).

Journal: PLoS ONE

Article Title: PRMT5: A novel regulator of Hepatitis B virus replication and an arginine methylase of HBV core

doi: 10.1371/journal.pone.0186982

Figure Lengend Snippet: (A) Schematic representation of HBc (Genotype A, subtype adw2) and its C-terminal deletion mutant (HBc-ΔC). ARD, Arginine-rich domain; S, serine residues modified by phosphorylation. (B) Flag-tagged PRMT1, PRMT3, PRMT5v1 and MEP50 were in vitro translated using TNT T7 quick coupled transcription/translation system and incubated with HBc fused to GST or GST alone immobilized on glutathione-Sepharose beads. The bound proteins were eluted and resolved on 10% SDS-PAGE followed by Western blot with anti-Flag antibodies. Five % of PRMTs´ protein input is shown below (5% input). (C) HBc protein interacts with PRMT3, PRMT5 and MEP50 via its C-terminal domain. HEK293T cells were transfected with equal amounts of Flag-tagged PRMT1, PRMT3, PRMT5 (v1, v2) and MEP50 expression constructs. Forty-eight hours after transfection, the cell lysates were incubated with HBc (aa 1–185), HBc-ΔC (aa 1–149) fused to GST or GST alone immobilized on glutathione-Sepharose beads. The bound proteins were eluted and resolved on 10% SDS-PAGE followed by Western blot with anti-Flag antibodies. Five % of PRMTs´ protein input is shown below (5% input). (D) Coomassie blue staining of purified GST, GST-HBc, and GST-HBc-ΔC used in GST pull-down experiments. (E) Co-immunoprecipitation of HBc and PRMTs in transfected HEK293T cells. HEK293T cells were transfected with Flag-tagged PRMTs’ expression plasmids and HBc-V5/AP expression plasmid, as indicated. Forty-eight hours after transfection, the cells were harvested and protein lysates were prepared. Protein lysates (400 μg) were immunoprecipitated (IP) with anti-Flag antibodies, and the immunoprecipitated complexes were analyzed by Western blot (WB) with NeutrAvidin conjugated to HRP. The relative levels of PRMTs and HBc in 40 μg of protein lysates are shown for comparison (10% input). (F) Co-immunoprecipitation of HBc and endogenous PRMT5 in HepG2.2.15 cells. Protein lysates (400 μg) isolated from HepG2.2.15 cells were immunoprecipitated (IP) with anti-HBc or control (IgG) antibodies. The immunoprecipitated complexes were analyzed by Western blot (WB) with anti-PRMT5 and anti-HBc antibodies. The relative levels of PRMT5 and HBc in 40 μg of protein lysates are shown in bottom panels (10% input).

Article Snippet: Expression plasmids for PRMT1, PRMT3, PRMT5v1 (splice variant 1), PRMT5v2 (splice variant 2), PRMT7, PRMT9 (Q6P2P2 in the UniProt Database, previously also referred to as PRMT10) and MEP50/WDR77 tagged with myc and Flag were purchased from OriGene Technologies.

Techniques: Mutagenesis, Modification, Phospho-proteomics, In Vitro, Incubation, SDS Page, Western Blot, Transfection, Expressing, Construct, Staining, Purification, Immunoprecipitation, Plasmid Preparation, Comparison, Isolation, Control

(A) Detection of monomethylation and symmetric dimethylation of HBc protein. HepG2_hNTCP cells were transfected with HBc-HA (full length, aa 1–185), HBc-ΔC-HA (C-terminal deletion, aa 1–149), or an empty vector (pcDNA). Forty-eight hours after transfection, cell lysates (400 μg) were precipitated with anti-HA antibodies (HBc and HBc-ΔC), and the precipitated complexes were analyzed by Western blot with monomethyl-arginine (MM-R, top panel) or symmetric-dimethyl-arginine (SDM-R, middle panel) antibodies. The quality/efficiency of anti-HA immunoprecipitation is shown by Western blot with anti-HA or anti-HBc antibodies in the bottom panels. *, non-specific WB signal. Red and green arrows show HBc protein fragments of 30 kDa and 48 kDa, respectively. (B) Cell lysates (400 μg) of HepG2.2.15 cells were precipitated with HBc antibodies and the precipitated complexes were analyzed by Western blot with monomethyl-arginine (MM-R, top panel) or symmetric-dimethyl-arginine (SDM-R, middle panel) antibodies. The expression level of HBc protein is shown in the bottom panel. *, non-specific. (C) Symmetric dimethylation of HBc is stimulated by PRMT5, PRMT7 and MEP50. HEK293T cells were co-transfected with a constant amount of HBc-HA expression plasmid in combination with expression plasmids encoding Flag-tagged PRMT1, PRMT3, PRMT5 (v1, v2), PRMT7, PRMT9, MEP50, or an empty vector. Forty-eight hours after transfection, cell lysates (400 μg) were precipitated with anti-HA antibodies (HBc), and the precipitated complexes were analyzed by Western blot with SDM-R antibodies. The relative levels of transfected HBc-HA and Flag-PRMTs or Flag-MEP50 in 40 μg of cell lysates were estimated by Western blots (10% input). The intensity of the symmetric dimethylation signal was quantified using the ImageQuant TL Array software and normalized to the level of HBc expression. The level of HBc methylation in mock (pcDNA) transfected cells was set to 1 (Quant. and graph below). Asterisks indicate statistically significant differences between the control (pcDNA) and PRMTs groups determined by ANOVA (*** P<0.001). Error bars represent SD of three independent experiments. (D) Down-regulation of PRMT5 and MEP50 inhibits symmetric dimethylation of HBc protein. HEK293T cells were co-transfected with a constant amount of HBc-HA expression plasmid in combination with PRMT3-, PRMT5- or MEP50-specific siRNAs, or control siRNA (ctrlsiRNA). Forty-eight hours after transfection, cell lysates (400 μg) were precipitated with anti-HA antibodies (HBc), and the precipitated complexes were analyzed by Western blot with SDM-R antibodies. The relative levels of endogenous PRMT5, MEP50, β-actin or transfected HBc-HA in 40 μg of cell lysates were estimated by Western blots (10% input). The intensity of the symmetric dimethylation signal was quantified as described in (C). The level of HBc methylation in mock (ctrlsiRNA) transfected cells was set to 1 (Quant. and graph below). Asterisks indicate statistically significant differences between the control (ctrlsiRNA) and PRMTsiRNA groups determined by ANOVA (* P<0.05; ** P<0.01). Error bars represent SD of three independent experiments. (E) Treatment with GSK591, a potent PRMT5/MEP50-specific inhibitor, reduces the symmetric arginine dimethylation of HBc protein. HepG2_hNTCP cells were transfected with equal amounts of HBc-HA expression plasmid. Twenty-four hours after transfection, the cells were treated with increasing concentrations of GSK591 (0, 0.5, 5, 50, 500 nM) for 72 hours as indicated. The cell lysates (40 μg) were analyzed by Western blotting (WB) with SDM-R, PRMT5, MEP50, HBc and β-actin antibodies. To analyze the level of symmetric-arginine dimethylation of HBc protein (bottom panel), the cell lysates (400 μg) were immunoprecipitated (IP) with anti-HA-specific antibodies followed by Western blotting with anti-SDM-R antibodies. The intensities of total cellular symmetric dimethylation and HBc protein dimethylation were quantified as described in (C) and normalized to the levels of β-actin or HBc expression, respectively. (F) Expression of HBc inhibits the PRMT5-mediated methylation of SmB/B’ and SmD3 splicing factors. HEK293T cells were co-transfected with a constant amount of HBc-HA expression plasmid in combination with expression plasmids encoding Flag-tagged PRMT5v1 and v2, or an empty vector, pcDNA, as indicated. Forty-eight hours after transfection, cell lysates (20 μg) were analyzed by Western blot with SDM-R, β-actin, Flag and HA antibodies. The levels of symmetrically dimethylated SmB/B’and SmD3 were quantified as described in (C) and normalized to the levels of β-actin expression. To confirm that the major methylated band corresponds to SmB/B’, the SmB/B’protein was immunoprecipitated from cell lysates (400 μg) with anti-SmB antibodies followed by Western blotting with anti-SDM-R antibodies (middle panels).

Journal: PLoS ONE

Article Title: PRMT5: A novel regulator of Hepatitis B virus replication and an arginine methylase of HBV core

doi: 10.1371/journal.pone.0186982

Figure Lengend Snippet: (A) Detection of monomethylation and symmetric dimethylation of HBc protein. HepG2_hNTCP cells were transfected with HBc-HA (full length, aa 1–185), HBc-ΔC-HA (C-terminal deletion, aa 1–149), or an empty vector (pcDNA). Forty-eight hours after transfection, cell lysates (400 μg) were precipitated with anti-HA antibodies (HBc and HBc-ΔC), and the precipitated complexes were analyzed by Western blot with monomethyl-arginine (MM-R, top panel) or symmetric-dimethyl-arginine (SDM-R, middle panel) antibodies. The quality/efficiency of anti-HA immunoprecipitation is shown by Western blot with anti-HA or anti-HBc antibodies in the bottom panels. *, non-specific WB signal. Red and green arrows show HBc protein fragments of 30 kDa and 48 kDa, respectively. (B) Cell lysates (400 μg) of HepG2.2.15 cells were precipitated with HBc antibodies and the precipitated complexes were analyzed by Western blot with monomethyl-arginine (MM-R, top panel) or symmetric-dimethyl-arginine (SDM-R, middle panel) antibodies. The expression level of HBc protein is shown in the bottom panel. *, non-specific. (C) Symmetric dimethylation of HBc is stimulated by PRMT5, PRMT7 and MEP50. HEK293T cells were co-transfected with a constant amount of HBc-HA expression plasmid in combination with expression plasmids encoding Flag-tagged PRMT1, PRMT3, PRMT5 (v1, v2), PRMT7, PRMT9, MEP50, or an empty vector. Forty-eight hours after transfection, cell lysates (400 μg) were precipitated with anti-HA antibodies (HBc), and the precipitated complexes were analyzed by Western blot with SDM-R antibodies. The relative levels of transfected HBc-HA and Flag-PRMTs or Flag-MEP50 in 40 μg of cell lysates were estimated by Western blots (10% input). The intensity of the symmetric dimethylation signal was quantified using the ImageQuant TL Array software and normalized to the level of HBc expression. The level of HBc methylation in mock (pcDNA) transfected cells was set to 1 (Quant. and graph below). Asterisks indicate statistically significant differences between the control (pcDNA) and PRMTs groups determined by ANOVA (*** P<0.001). Error bars represent SD of three independent experiments. (D) Down-regulation of PRMT5 and MEP50 inhibits symmetric dimethylation of HBc protein. HEK293T cells were co-transfected with a constant amount of HBc-HA expression plasmid in combination with PRMT3-, PRMT5- or MEP50-specific siRNAs, or control siRNA (ctrlsiRNA). Forty-eight hours after transfection, cell lysates (400 μg) were precipitated with anti-HA antibodies (HBc), and the precipitated complexes were analyzed by Western blot with SDM-R antibodies. The relative levels of endogenous PRMT5, MEP50, β-actin or transfected HBc-HA in 40 μg of cell lysates were estimated by Western blots (10% input). The intensity of the symmetric dimethylation signal was quantified as described in (C). The level of HBc methylation in mock (ctrlsiRNA) transfected cells was set to 1 (Quant. and graph below). Asterisks indicate statistically significant differences between the control (ctrlsiRNA) and PRMTsiRNA groups determined by ANOVA (* P<0.05; ** P<0.01). Error bars represent SD of three independent experiments. (E) Treatment with GSK591, a potent PRMT5/MEP50-specific inhibitor, reduces the symmetric arginine dimethylation of HBc protein. HepG2_hNTCP cells were transfected with equal amounts of HBc-HA expression plasmid. Twenty-four hours after transfection, the cells were treated with increasing concentrations of GSK591 (0, 0.5, 5, 50, 500 nM) for 72 hours as indicated. The cell lysates (40 μg) were analyzed by Western blotting (WB) with SDM-R, PRMT5, MEP50, HBc and β-actin antibodies. To analyze the level of symmetric-arginine dimethylation of HBc protein (bottom panel), the cell lysates (400 μg) were immunoprecipitated (IP) with anti-HA-specific antibodies followed by Western blotting with anti-SDM-R antibodies. The intensities of total cellular symmetric dimethylation and HBc protein dimethylation were quantified as described in (C) and normalized to the levels of β-actin or HBc expression, respectively. (F) Expression of HBc inhibits the PRMT5-mediated methylation of SmB/B’ and SmD3 splicing factors. HEK293T cells were co-transfected with a constant amount of HBc-HA expression plasmid in combination with expression plasmids encoding Flag-tagged PRMT5v1 and v2, or an empty vector, pcDNA, as indicated. Forty-eight hours after transfection, cell lysates (20 μg) were analyzed by Western blot with SDM-R, β-actin, Flag and HA antibodies. The levels of symmetrically dimethylated SmB/B’and SmD3 were quantified as described in (C) and normalized to the levels of β-actin expression. To confirm that the major methylated band corresponds to SmB/B’, the SmB/B’protein was immunoprecipitated from cell lysates (400 μg) with anti-SmB antibodies followed by Western blotting with anti-SDM-R antibodies (middle panels).

Article Snippet: Expression plasmids for PRMT1, PRMT3, PRMT5v1 (splice variant 1), PRMT5v2 (splice variant 2), PRMT7, PRMT9 (Q6P2P2 in the UniProt Database, previously also referred to as PRMT10) and MEP50/WDR77 tagged with myc and Flag were purchased from OriGene Technologies.

Techniques: Transfection, Plasmid Preparation, Western Blot, Immunoprecipitation, Expressing, Software, Methylation, Control